4f775810871daffb3d5e7a564253481a2bb88ede,java/src/org/broadinstitute/sting/gatk/walkers/annotator/HaplotypeScore.java,HaplotypeScore,getConsensusHaplotype,#Haplotype#Haplotype#,190

Before Change


                consensusQuals[i] = haplotypeA.getQuals()[i];
            } else {
                consensusChars[i] = chA;
                consensusQuals[i] = haplotypeA.getQuals()[i]+haplotypeB.getQuals()[i];
            }
        }

After Change


        byte[] consensusChars = new byte[length];
        double[] consensusQuals = new double[length];

        final double[] qualsA = haplotypeA.getQuals();
        final double[] qualsB = haplotypeB.getQuals();

        for (int i=0; i < length; i++) {