4f775810871daffb3d5e7a564253481a2bb88ede,java/src/org/broadinstitute/sting/gatk/walkers/annotator/HaplotypeScore.java,HaplotypeScore,getHaplotypeFromRead,#ExtendedPileupElement#number#,163

In pattern: SUPERPATTERN

Frequency: 5

Non-data size: 2


Instances


1287596457
ebanks@348d0f76-0448-11de-a6fe-93d51630548a
broadgsa/gatk,4f775810871daffb3d5e7a564253481a2bb88ede,java/src/org/broadinstitute/sting/gatk/walkers/annotator/HaplotypeScore.java,HaplotypeScore,getHaplotypeFromRead,#ExtendedPileupElement#number#,163


1259620147
rpoplin@348d0f76-0448-11de-a6fe-93d51630548a
broadgsa/gatk,6bb864da2a7941caaebb0de351cb488164b69a7c,java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CycleCovariate.java,CycleCovariate,getValue,#SAMRecord#number#,60


1287596457
ebanks@348d0f76-0448-11de-a6fe-93d51630548a
broadgsa/gatk,4f775810871daffb3d5e7a564253481a2bb88ede,java/src/org/broadinstitute/sting/gatk/walkers/annotator/HaplotypeScore.java,HaplotypeScore,scoreReadAgainstHaplotype,#SAMRecord#number#number#Haplotype#,264


1259615760
rpoplin@348d0f76-0448-11de-a6fe-93d51630548a
broadgsa/gatk,b89b9adb2cac529daee8d221983b86e7dd5c29fb,java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CovariateCounterWalker.java,CovariateCounterWalker,map,#RefMetaDataTracker#ReferenceContext#AlignmentContext#,248


1259615760
rpoplin@348d0f76-0448-11de-a6fe-93d51630548a
broadgsa/gatk,b89b9adb2cac529daee8d221983b86e7dd5c29fb,java/src/org/broadinstitute/sting/gatk/walkers/recalibration/DinucCovariate.java,DinucCovariate,getValue,#SAMRecord#number#,59