19cf37d4e3bb5a055f330bf42ced6b7b8898cf4b,public/java/src/org/broadinstitute/sting/utils/activeregion/ActiveRegion.java,ActiveRegion,equalExceptReads,#ActiveRegion#,92

Before Change


        if ( isActive != other.isActive ) return false;
        if ( genomeLocParser != other.genomeLocParser ) return false;
        if ( extension != other.extension ) return false;
        if ( ! extendedLoc.equals(other.extendedLoc) ) return false;
        return true;
    }
}

After Change


    public void removeAll( final ArrayList<GATKSAMRecord> readsToRemove ) { reads.removeAll( readsToRemove ); }

    public boolean equalExceptReads(final ActiveRegion other) {
        if ( activeRegionLoc.compareTo(other.activeRegionLoc) != 0 ) return false;
        if ( isActive != other.isActive ) return false;
        if ( genomeLocParser != other.genomeLocParser ) return false;
        if ( extension != other.extension ) return false;
        if ( extendedLoc.compareTo(other.extendedLoc) != 0 ) return false;
        return true;
    }
}