a12bc63e5c2b99e52baa9eebe85667a4d1abec3d,public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java,UnifiedGenotyper,initialize,#,207

Before Change


        // get all of the unique sample names
        // if we're supposed to assume a single sample, do so
        Set<String> samples = new TreeSet<String>();
        if ( UAC.ASSUME_SINGLE_SAMPLE != null )
            samples.add(UAC.ASSUME_SINGLE_SAMPLE);
        else
            samples = SampleUtils.getSAMFileSamples(getToolkit().getSAMFileHeader());

        // initialize the verbose writer
        if ( verboseWriter != null )

After Change


     **/
    public void initialize() {
        // get all of the unique sample names
        Set<String> samples = SampleUtils.getSAMFileSamples(getToolkit().getSAMFileHeader());

        // initialize the verbose writer
        if ( verboseWriter != null )