772291c38fb3dae213030dd4882d692fd1fa9dec,java/src/org/broadinstitute/sting/playground/gatk/walkers/replication_validation/ReplicationValidationWalker.java,ReplicationValidationWalker,map,#RefMetaDataTracker#ReferenceContext#AlignmentContext#,159
Before Change
if (referenceSamplePileup != null && !referenceSamplePileup.isEmpty() && !poolPileup.isEmpty()) {
// Build error model
double [] errorModel = buildErrorModel(referenceSamplePileup.getBases(), trueReferenceBase, defaultPrior);
// Debug error model
System.out.println(laneID + ":");
After Change
ReadBackedPileup poolPileup = lanePileup.getPileupForSampleName(pool);
// Debug error model
if (referenceSamplePileup.getBases().length > 50) {
System.out.println("\n" + laneID + " - " + pool + ": " + referenceSamplePileup.getBases().length);
for (double v : errorModel)
System.out.print(v + ", ");