f1b0f3bc49836a6a7cddf050f6bad1a089a797ee,java/src/org/broadinstitute/sting/gatk/refdata/features/annotator/AnnotatorInputTableCodec.java,AnnotatorInputTableCodec,decodeLoc,#String#,88

Before Change


            loc = genomeLocParser.parseGenomeInterval(chr);
        else
            loc = genomeLocParser.createGenomeLoc(chr, Integer.valueOf(st.nextToken()), Integer.valueOf(st.nextToken()));
        return new AnnotatorInputTableFeature(loc.getContig(), (int)loc.getStart(), (int)loc.getStop());
    }

After Change


                throw new CodecLineParsingException("Couldn't parse GenomeLoc out of the following line because there aren't enough tokens.\nLine: " + line);
            loc = genomeLocParser.createGenomeLoc(chr, Integer.valueOf(st.nextToken()), Integer.valueOf(st.nextToken()));
        }
        return new AnnotatorInputTableFeature(loc.getContig(), loc.getStart(), loc.getStop());
    }