ce72932a454fec661d12c410ed377adacc680933,java/src/org/broadinstitute/sting/playground/gatk/walkers/SomaticCoverageWalker.java,SomaticCoverageWalker,map,#RefMetaDataTracker#char#LocusContext#,47

Before Change


        totalSites++;

        if (totalSites % 20000 == 0) {
            out.println(String.format("%s:%d %d %d %d %d", context.getContig(), context.getPosition(), totalSites, tumorCovered, normalCovered, somaticCovered));
        }

        return 1;

After Change


//        }

        StringBuilder sb = new StringBuilder();
        sb.append(context.getContig()).append(" ");
        sb.append(context.getPosition());
        out.println(sb.toString());
        return 1;
    }