6e394490cb1666c0d0f92ce2958c8c6dbb648d85,java/test/org/broadinstitute/sting/gatk/traversals/TraverseReadsTest.java,TraverseReadsTest,testUnmappedReadCount,#,192

Before Change


                readSize);
        SAMDataSource dataSource = null;
        try {
            dataSource = new SAMDataSource(TraversalEngine.unpackReads(bamList));
            dataSource.viewUnmappedReads(true);
            //dataSource.viewUnmappedReads(false);
        }

After Change


        ShardStrategy shardStrategy = ShardStrategyFactory.shatter(ShardStrategyFactory.SHATTER_STRATEGY.READS,
                ref.getSequenceDictionary(),
                readSize);
        List<File> unpackedReads = null;
        try {
            unpackedReads = TraversalEngine.unpackReads(bamList);
        }
        catch (FileNotFoundException ex) {
            throw new RuntimeException(ex);
        }

        SAMDataSource dataSource = new SAMDataSource(unpackedReads);
        dataSource.viewUnmappedReads(true);

        countReadWalker.initialize();