4f775810871daffb3d5e7a564253481a2bb88ede,java/src/org/broadinstitute/sting/gatk/walkers/annotator/HaplotypeScore.java,HaplotypeScore,getConsensusHaplotype,#Haplotype#Haplotype#,190
Before Change
consensusQuals[i] = haplotypeA.getQuals()[i];
} else {
consensusChars[i] = chA;
consensusQuals[i] = haplotypeA.getQuals()[i]+haplotypeB.getQuals()[i];
}
}
After Change
byte[] consensusChars = new byte[length];
double[] consensusQuals = new double[length];
final double[] qualsA = haplotypeA.getQuals();
final double[] qualsB = haplotypeB.getQuals();
for (int i=0; i < length; i++) {