f3b38c0d3e5e8325df836927ab95de453cb66eed,java/src/org/broadinstitute/sting/oneoffprojects/walkers/phasing/PhaseByTransmission.java,PhaseByTransmission,computeTransmissionLikelihoodOfGenotypeConfiguration,#Genotype#Genotype#Genotype#,106

Before Change


    }

    private double computeTransmissionLikelihoodOfGenotypeConfiguration(Genotype mom, Genotype dad, Genotype child) {
        double[] momLikelihoods = mom.getLikelihoods().getAsVector();
        double[] dadLikelihoods = dad.getLikelihoods().getAsVector();
        double[] childLikelihoods = child.getLikelihoods().getAsVector();

After Change


    }

    private double computeTransmissionLikelihoodOfGenotypeConfiguration(Genotype mom, Genotype dad, Genotype child) {
        double[] momLikelihoods = MathUtils.normalizeFromLog10(mom.getLikelihoods().getAsVector());
        double[] dadLikelihoods = MathUtils.normalizeFromLog10(dad.getLikelihoods().getAsVector());
        double[] childLikelihoods = MathUtils.normalizeFromLog10(child.getLikelihoods().getAsVector());