c00bd3c6a34e96c0f0fcc71a8da50492f39d89c5,public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsUnitTest.java,TraverseActiveRegionsUnitTest,testPrimaryReadMapping,#TraverseActiveRegions#,302

Before Change


        verifyReadMapping(region, "shard_boundary_1_pre");

        region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 16385, 16927));
        verifyReadMapping(region, "shard_boundary_1_post", "shard_boundary_equal");

        region = activeRegions.get(genomeLocParser.createGenomeLoc("20", 10000, 10100));
        verifyReadMapping(region, "simple20");

After Change


        verifyReadMapping(region);

        region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 14908, 16384));
        verifyReadMapping(region, "shard_boundary_1_pre", "shard_boundary_1_post", "shard_boundary_equal");

        region = activeRegions.get(genomeLocParser.createGenomeLoc("1", 16385, 16927));
        verifyReadMapping(region);