a12bc63e5c2b99e52baa9eebe85667a4d1abec3d,public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyper.java,UnifiedGenotyper,initialize,#,207
Before Change
// get all of the unique sample names
// if we're supposed to assume a single sample, do so
Set<String> samples = new TreeSet<String>();
if ( UAC.ASSUME_SINGLE_SAMPLE != null )
samples.add(UAC.ASSUME_SINGLE_SAMPLE);
else
samples = SampleUtils.getSAMFileSamples(getToolkit().getSAMFileHeader());
// initialize the verbose writer
if ( verboseWriter != null )
After Change
**/
public void initialize() {
// get all of the unique sample names
Set<String> samples = SampleUtils.getSAMFileSamples(getToolkit().getSAMFileHeader());
// initialize the verbose writer
if ( verboseWriter != null )