7afc10fd6f2d1caf3663a8b7c08b7d5d8920e25a,java/src/org/broadinstitute/sting/playground/utils/GenotypingCallStats.java,GenotypingCallStats,toString,#,34
Before Change
covered, assessed, Utils.percentage(assessed, covered),
ref, Utils.percentage(ref,assessed),
variant, Utils.percentage(variant,assessed),
non_biallelic_variant, Utils.percentage(non_biallelic_variant, variant))
);
return b.toString();
After Change
ref, Utils.percentage(ref,assessed))
);
int z = consistent_ref+inconsistent_ref;
b.append( String.format(" ref assessed for consistency: %d (%3.2f%% ref)%n",
z, Utils.percentage(z, ref) )
);
b.append( String.format(" consistent ref: %d (%3.2f%% consistency-assessed ref)%n",
consistent_ref, Utils.percentage(consistent_ref,z) )
);
b.append( String.format(" variants: %d (%3.2f%% assessed)%n",
variant, Utils.percentage(variant,assessed))
);
b.append( String.format(" multiallelic: %d (%3.2f%% variants)%n",
non_biallelic_variant, Utils.percentage(non_biallelic_variant, variant))
);
z = consistent_variant+inconsistent_variant;
b.append( String.format(" variants assessed for consistency: %d (%3.2f%% variants)%n",