772291c38fb3dae213030dd4882d692fd1fa9dec,java/src/org/broadinstitute/sting/playground/gatk/walkers/replication_validation/ReplicationValidationWalker.java,ReplicationValidationWalker,map,#RefMetaDataTracker#ReferenceContext#AlignmentContext#,159

Before Change


            if (referenceSamplePileup != null && !referenceSamplePileup.isEmpty() && !poolPileup.isEmpty()) {

                // Build error model
                double [] errorModel = buildErrorModel(referenceSamplePileup.getBases(), trueReferenceBase, defaultPrior);

                // Debug error model
                System.out.println(laneID + ":");

After Change


                    ReadBackedPileup poolPileup = lanePileup.getPileupForSampleName(pool);

                    // Debug error model
                    if (referenceSamplePileup.getBases().length > 50) {
                        System.out.println("\n" + laneID + " - " + pool + ": " + referenceSamplePileup.getBases().length);
                        for (double v : errorModel)
                            System.out.print(v + ", ");