9458f01409b5307981992bdeb7f26d460465f01f,public/java/test/org/broadinstitute/sting/utils/pileup/ReadBackedPileupUnitTest.java,ReadBackedPileupUnitTest,testSplitBySample,#,119

Before Change


                                                                      Arrays.asList(read2,read4),
                                                                      Arrays.asList(1,1));
        Map<Sample,ReadBackedPileupImpl> sampleToPileupMap = new HashMap<Sample,ReadBackedPileupImpl>();
        sampleToPileupMap.put(new Sample(readGroupOne.getSample(), null),sample1Pileup);
        sampleToPileupMap.put(new Sample(readGroupTwo.getSample(), null),sample2Pileup);

        ReadBackedPileup compositePileup = new ReadBackedPileupImpl(null,sampleToPileupMap);

After Change


                                                                      Arrays.asList(read2,read4),
                                                                      Arrays.asList(1,1));
        Map<String,ReadBackedPileupImpl> sampleToPileupMap = new HashMap<String,ReadBackedPileupImpl>();
        sampleToPileupMap.put(readGroupOne.getSample(),sample1Pileup);
        sampleToPileupMap.put(readGroupTwo.getSample(),sample2Pileup);

        ReadBackedPileup compositePileup = new ReadBackedPileupImpl(null,sampleToPileupMap);