ca8a3bd85ed960a1b62d03fcbb8712301c6372d0,java/src/org/broadinstitute/sting/playground/gatk/walkers/recalibration/RecalData.java,RecalData,bases2dinucIndex,#char#char#boolean#,77

Before Change


    }

    public static int bases2dinucIndex(char prevBase, char base, boolean Complement) {
        if ( BaseUtils.simpleBaseToBaseIndex(prevBase) == -1 || BaseUtils.simpleBaseToBaseIndex(base) == -1 )
            return -1;

        if (!Complement) {

After Change



    public static int bases2dinucIndex(char prevBase, char base) {
        int pbI = BaseUtils.simpleBaseToBaseIndex(prevBase);
        int bI = BaseUtils.simpleBaseToBaseIndex(base);
        return (pbI == -1 || bI == -1) ? -1 : pbI * 4 + bI;
    }